The incident happened as Australia travelled back to their hotel following day one of the second Test in Chittagong.
Assam DGP Mukesh Sahay said that nobody was injured in the stone attack.
Teams: India: Virat Kohli (C), Rohit Sharma, Shikhar Dhawan, Manish Pandey, MS Dhoni, Kedar Jadhav, Hardik Pandya, Bhuvneshwar Kumar, Kuldeep Yadav, Yuzvendra Chahal and Jasprit Bumrah. No player was, however, hurt in the incident, a city police source informed.
"Have spoken to Sarbananda Sonowalji about the Guwahati incident".More news: Now Google Finds Trace Of Russian Bought Ads On YouTube, Gmail
The BCCI, ICC or Cricket Australia are yet to respond to the incident.
"It was a devious act to tarnish Guwahati's reputation as an emerging sports hub. We strongly condemn it", Sonowal said on his official Twitter account.
"Whoever got indulged in the hooliganism did it with the sole objective of defaming Assam & derailing its journey towards the top. the culprits will face the full force of the law & given exemplary punishment".
However, Rathore said that the cricket team was satisfied with the safety and security arrangements made by the state.More news: Crude Oil Tightropes USD50 Again
In a letter written to the state government, Khanna reasserted the football body's gratitude towards Government of Assam and stated that, the security and the facilities that have been provided to the worldwide teams have been immaculate and have set the benchmark for other events of this stature that India may host in the future.
Two people have been arrested as police investigations into the incident continue, the Press Trust of India reported.
India's sports minister Wednesday sought to reassure Australian cricketers about their safety after a rock shattered a window on the bus taking them to their hotel following a series-leveling win in the second Twenty20 worldwide.More news: Halep to become number one after reaching China final